• BIO-Complexity
• Journal of Bacteriology
• Journal of Molecular Biology
• Journal of Mathematical Biology
• Complexity
• Theoretical Biology and Medical Modelling
• Life
• Entropy
• Quarterly Review of Biology
• Frontiers in Bioscience
• Acta Biotheoretica
• Biomimetics
• Biomimetics and Bioinspiration
• Systems Engineering
• Journal of the Royal Statistical Society
• Journal of BioSemiotics
• Origins of Life and Evolution of Biospheres
• Rivista di Biologia / Biology Forum
• Frontiers in Robotics and AI
• Perspectives in Biology and Medicine
• Protein Science
• Physics Essays
• Physica Scripta
• Encyclopedia of Life Sciences
• Journal of Engineering Design
• Proceedings of the Biological Society of Washington
• Annual Review of Genetics, among others.
• Douglas D. Axe,“Estimating the Prevalence of Protein Sequences Adopting Functional Enzyme Folds,”Journal of Molecular Biology, Vol. 341:1295–1315 (2004).
• Michael Behe and David W. Snoke,“Simulating evolution by gene duplication of protein features that require multiple amino acid residues,”Protein Science, Vol. 13 (2004).
• William A. Dembski and Robert J. Marks II,“The Search for a Search: Measuring the Information Cost of Higher Level Search,”Journal of Advanced Computational Intelligence and Intelligent Informatics, Vol. 14 (5):475-486 (2010).
• Ann K. Gauger and Douglas D. Axe,“The Evolutionary Accessibility of New Enzyme Functions: A Case Study from the Biotin Pathway,”BIO-Complexity, Vol. 2011(1) (2011).
• Ann K. Gauger, Stephanie Ebnet, Pamela F. Fahey, and Ralph Seelke,“Reductive Evolution Can Prevent Populations from Taking Simple Adaptive Paths to High Fitness,”BIO-Complexity, Vol. 2010 (2) (2010).
• Winston Ewert, “AminoGraph Analysis of the Auditory Protein Prestin From Bats and Whales Reveals a Dependency-Graph Signal That Is Missed by the Standard Convergence Model,”BIO-Complexity, 2023: 1 (2023).
• Steinar Thorvaldsen and Ola Hössjer, “Estimating the information content of genetic sequence data,”Journal of the Royal Statistical Society: Series C: Applied Statistics, 2023: qlad062 (2023).
• Richard S. Gunasekera, Komal K. B. Raja, Suresh Hewapathirana, Emanuel Tundrea, Vinodh Gunasekera, Thushara Galbadage, and Paul A. Nelson, “ORFanID: A web-based search engine for the discovery and identification of orphan and taxonomically restricted gens,”PLOS One, 18 (10): e0291260 (2023).
• Stuart Burgess, Alex Beeston, Joshua Carr, Kallia Siempou, Maya Simmonds, and Yasmin Zanker, “A Bio-Inspired Arched Foot with Individual Toe Joints and Plantar Fascia,”Biomimetics, 8 (6): 455 (2023).
• Olen R. Brown and David A. Hullender, “Neo-Darwinism must Mutate to survive,”Progress in Biophysics and Molecular Biology, 172: 24-38 (2022).
• Ola Hössjer, Günter Bechly, and Ann Gauger, “On the waiting time until coordinated mutations get fixed in regulatory sequences,”Journal of Theoretical Biology, Vol. 524: 110657 (2021).
• Steinar Thorvaldsen and Ola Hössjer, “Using statistical methods to model the fine-tuning of molecular machines and systems,”Journal of Theoretical Biology, 501: 110352 (September 21, 2020).
• Ola Hössjer and Ann Gauger, “A single-couple origin is possible,”BIO-Complexity, 2019: 1 (2019).
• Ola Hössjer, Günter Bechly, and Ann Gauger, “Phase-type distribution approximations of the waiting time until coordinated mutations get fixed in a population.” Chapter 12 in: Silvestrov, S., Malyarenko, A. & Rancic, M. (eds):Stochastic Processes and Algebraic Structures – From Theory Towards Applications. Volume 1: Stochastic Processes and Applications.Springer Proceedings in Mathematics and Statistics, 271: 245-313 (2018).
• Wolf-Ekkehard Lönnig, “Mendel’s Paper on the Laws of Heredity (1866): Solving the Enigma of the Most Famous ‘Sleeping Beauty’ in Science,”eLS(Jon Wiley & Sons, 2017).
• Paul A. Nelson and Richard J.A. Buggs, “Next Generation Apomorphy: The Ubiquity of Taxonomically Restricted Genes,” in Next Generation Systematics, ed. Peter D. Olson, Joseph Hughes, and James A. Cotton (Cambridge: Cambridge University Press, 2016), pp. 237-263.
• Dustin J. Van Hofwegen, Carolyn J. Hovde, and Scott A. Minnich, “Rapid Evolution of Citrate Utilization by Escherichia coli by Direct Selection Requires citT and dctA,”Journal of Bacteriology, 198 (7): 1022-1034 (2016).
• David W. Snoke, Jeffrey Cox, and Donald Petcher, “Suboptimality and Complexity in Evolution,”Complexity, 21(1): 322-327 (September/October, 2015).
• Jonathan Wells, “Membrane Patterns Carry Ontogenetic Information That Is Specified Independently of DNA,”BIO-Complexity, 2014: 2 (2014).
• Wolf-Ekkehard Lönnig, “Mutagenesis in Physalis pubescens L. ssp. floridana: Some further research on Dollo’s Law and the Law of Recurrent Variation,”Floriculture and Ornamental Biotechnology, 1-21 (2010).
• Vladimir I. shCherbak and Maxim A. Makukov,“The ‘Wow! Signal’ of the terrestrial genetic code,”Icarus, Vol. 224 (1): 228-242 (May, 2013).
• Joseph A. Kuhn,“Dissecting Darwinism,”Baylor University Medical Center Proceedings, Vol. 25(1): 41-47 (2012).
• Winston Ewert, William A. Dembski, and Robert J. Marks II,“Evolutionary Synthesis of Nand Logic: Dissecting a Digital Organism,”Proceedings of the 2009 IEEE International Conference on Systems, Man, and Cybernetics, pp. 3047-3053 (October, 2009).
• Douglas D. Axe, Brendan W. Dixon, Philip Lu,“Stylus: A System for Evolutionary Experimentation Based on a Protein/Proteome Model with Non-Arbitrary Functional Constraints,”PLoS One, Vol. 3(6):e2246 (June 2008).
• Kirk K. Durston, David K. Y. Chiu, David L. Abel, Jack T. Trevors,“Measuring the functional sequence complexity of proteins,”Theoretical Biology and Medical Modelling, Vol. 4:47 (2007).
• David L. Abel and Jack T. Trevors,“Self-organization vs. self-ordering events in life-origin models,”Physics of Life Reviews, Vol. 3:211–228 (2006).
• Frank J. Tipler,“Intelligent Life in Cosmology,”International Journal of Astrobiology, Vol. 2(2): 141-148 (2003).
• Michael J. Denton, Craig J. Marshall, and Michael Legge,“The Protein Folds as Platonic Forms: New Support for the pre-Darwinian Conception of Evolution by Natural Law,”Journal of Theoretical Biology, Vol. 219: 325-342 (2002).
• Stanley L. Jaki,“Teaching of Transcendence in Physics,”American Journal of Physics, Vol. 55(10):884-888 (October 1987).
• Granville Sewell,“Postscript,”inAnalysis of a Finite Element Method: PDE/PROTRAN(New York: Springer Verlag, 1985).A.C. McIntosh,“Evidence of design in bird feathers and avian respiration,”International Journal of Design & Nature and Ecodynamics, Vol. 4(2):154–169 (2009).
• Richard v. Sternberg, “DNA Codes and Information: Formal Structures and Relational Causes,”Acta Biotheoretica, Vol. 56(3):205-232 (September, 2008).
• Wolf-Ekkehard Lönnig and Heinz Saedler,“Chromosome Rearrangement and Transposable Elements,”Annual Review of Genetics, Vol. 36:389–410 (2002).
• Douglas D. Axe,“Extreme Functional Sensitivity to Conservative Amino Acid Changes on Enzyme Exteriors,”Journal of Molecular Biology, Vol. 301:585-595 (2000).
• William A. Dembski,The Design Inference: Eliminating Chance through Small Probabilities(Cambridge: Cambridge University Press, 1998).